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Registro Completo |
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Biblioteca(s): |
Embrapa Pantanal. |
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Data corrente: |
25/10/2023 |
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Data da última atualização: |
25/10/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
DINIZ SOBRINHO, F. de A.; MOURA, J. de O.; BAJAY, M. M.; CASTELO BRANCO, L.; BEZERRA, R. D. S.; ARAÚJO, A. M. de. |
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Afiliação: |
FRANCISCO DE A. DINIZ SOBRINHO, UNIVERSIDADE FEDERAL DO PIAUÍ, Teresina-PI; JEANE DE O. MOURA, INSTITUTO FEDERAL DO PIAUÍ, Teresina-PI; MIKLOS M. BAJAY, UNIVERSIDADE DO ESTADO DE SANTA CATARINA, Laguna-SC; LEONARDO CASTELO BRANCO, UNIVERSIDADE FEDERAL RURAL DA AMAZÔNIA, Belém-PA; ROOSEVELT D. S. BEZERRA, INSTITUTO FEDERAL DO PIAUÍ, Teresina-PI; ADRIANA MELLO DE ARAUJO, CPAP. |
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Título: |
Capra hircus outliers markers in Brazil: searching for genomic regions under the action of natural selection. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Genetics and Molecular Biology, v. 46, n. 3, e20230084, 2023. |
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ISSN: |
1678-4685 |
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DOI: |
https://doi.org/10.1590/1678-4685-GMB-2023-0084 |
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Idioma: |
Inglês |
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Conteúdo: |
Identifying genome regions subject to selection in local breeds of Brazil is an opportunity to elucidate the C. hircus genome plasticity, flowing the colonization history of the country. Using SNP Bead Chip Illumina 50K genotyping of Brazilian Anglo-Nubian (standardized breed) and Marota (local endangered population from the semiarid area of Brazil) to show outliers loci in genome regions subject to selection. After applying data quality control, 45,600 SNPs were included in this investigation. Principal component analysis (PCAdapt) and FDIST2 analysis signalized 14 genomic regions more affected by selection in the Brazilian dry zone environment. The genome study signalized regions that are close to the sequences of genes related to growth and embryonic skeletal development (FGF12, AMPD2, OSTN). In addition, flagged regions close to the genes UTSB2 and SLC5A2 contribute to research on functional adaptation with low water needs and poor nutritive diet to survive. Both genes encode proteins that act on osmotic pathways and avoid cell flooding on stress cell responses. Further studies on the genetic role and involvement of these outliers? genomic regions, building a robust conceptual high-resolution map of natural selection drives, help to achieve hardiness candidate genes linked to the evolutionary history of Capra hircus in the semiarid area of Brazil. |
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Palavras-Chave: |
Candidate genes; Hardiness; Non-neutral loci; Outliers; Seleção natural; Tropical adaptation. |
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Thesagro: |
Capra Hircus; Caprino; Genoma; Seleção. |
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Thesaurus Nal: |
Genome; Natural selection. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1157489/1/gmb-2023.pdf
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Marc: |
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024 7 $ahttps://doi.org/10.1590/1678-4685-GMB-2023-0084$2DOI
100 1 $aDINIZ SOBRINHO, F. de A.
245 $aCapra hircus outliers markers in Brazil$bsearching for genomic regions under the action of natural selection.$h[electronic resource]
260 $c2023
520 $aIdentifying genome regions subject to selection in local breeds of Brazil is an opportunity to elucidate the C. hircus genome plasticity, flowing the colonization history of the country. Using SNP Bead Chip Illumina 50K genotyping of Brazilian Anglo-Nubian (standardized breed) and Marota (local endangered population from the semiarid area of Brazil) to show outliers loci in genome regions subject to selection. After applying data quality control, 45,600 SNPs were included in this investigation. Principal component analysis (PCAdapt) and FDIST2 analysis signalized 14 genomic regions more affected by selection in the Brazilian dry zone environment. The genome study signalized regions that are close to the sequences of genes related to growth and embryonic skeletal development (FGF12, AMPD2, OSTN). In addition, flagged regions close to the genes UTSB2 and SLC5A2 contribute to research on functional adaptation with low water needs and poor nutritive diet to survive. Both genes encode proteins that act on osmotic pathways and avoid cell flooding on stress cell responses. Further studies on the genetic role and involvement of these outliers? genomic regions, building a robust conceptual high-resolution map of natural selection drives, help to achieve hardiness candidate genes linked to the evolutionary history of Capra hircus in the semiarid area of Brazil.
650 $aGenome
650 $aNatural selection
650 $aCapra Hircus
650 $aCaprino
650 $aGenoma
650 $aSeleção
653 $aCandidate genes
653 $aHardiness
653 $aNon-neutral loci
653 $aOutliers
653 $aSeleção natural
653 $aTropical adaptation
700 1 $aMOURA, J. de O.
700 1 $aBAJAY, M. M.
700 1 $aCASTELO BRANCO, L.
700 1 $aBEZERRA, R. D. S.
700 1 $aARAÚJO, A. M. de
773 $tGenetics and Molecular Biology$gv. 46, n. 3, e20230084, 2023.
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Embrapa Pantanal (CPAP) |
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